Protein Molecular Weight Calculator

Estimate protein mass in daltons and kilodaltons from amino acid count for quick lab planning.

Protein Molecular Weight Formula

MW ≈ amino acids × 110 Da

A common quick estimate is that each amino acid residue contributes about 110 daltons after peptide-bond formation. Divide daltons by 1,000 to convert the estimate to kilodaltons.

SymbolVariableDescription
aaAmino acid countThe number of residues in the protein sequence.
DaDaltonsA molecular mass unit commonly used for proteins.
kDaKilodaltons1 kDa equals 1,000 Da.

How to Estimate Protein Molecular Weight

  1. 1

    Enter sequence length

    Use the number of amino acid residues in the mature protein or construct you want to estimate.

  2. 2

    Calculate mass

    The calculator multiplies amino acid count by the average residue mass of about 110 Da.

  3. 3

    Use kDa for lab context

    Read the kDa estimate when choosing gel percentage, ladder range, tags, or purification expectations.

Common Protein Size Examples

This protein molecular weight calculator is best for quick estimates before you look up exact sequence mass. A 100 amino acid peptide is roughly 11 kDa, a 300 amino acid protein is roughly 33 kDa, and a 500 amino acid protein is roughly 55 kDa.

Amino acidsEstimated mass
100 aa11 kDa
250 aa27.5 kDa
300 aa33 kDa
500 aa55 kDa
1,000 aa110 kDa

When the 110 Da Estimate Is Not Enough

The 110 Da rule is useful for gel planning, quick construct checks, and approximate protein size. Exact molecular weight depends on the actual amino acid sequence, signal peptide cleavage, tags, disulfides, modifications, and isotope composition.

  • Use exact sequence calculators for mass spectrometry or precise biochemistry.
  • Add tag mass when estimating His-tag, GST, MBP, or fluorescent fusion proteins.
  • SDS-PAGE apparent size can differ from calculated molecular weight because proteins migrate differently.

Protein Molecular Weight FAQ

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